How many calories a day are you getting on average?
I recently began tracking my caloric intake through FD and my average has been around 1700-1900/daily.
What would you rate you current job activity level?
Very low. I walk around outside for 10-15 minutes a day, but otherwise, very, very low.
What joint problem do you have that caused you to no longer jog?
A prior accident has caused some of my issues. I have shoulder (might sound odd) and knee pain when jogging.
OKay from what I gathered, and I never say this, I think your calories on AVERAGE might be a little high for you to get good fat loss churning based on your workouts/daily activity. Now if you kick up your training program then this is a great caloric range for you.
As far as your diet it isn't bad at all. Unless you are trying to get competition lean I think you will find success, just make sure overall you focus on good protein intake with EVERY MEAL and good fats.
Training is the area you need to really fix. Now if you have a serious joint/muscle problem you need to get it looked at and figure out what you can do. I do not feel comfortable advising you too much on a program if you are dealing with an injury. That being said if you get the okay to go forth into a program here is what I recommend as a general starting point for all...
2-3 days a week of Full Body resistance training focusing on compound movements. 6-8 exercises overall for the large muscle groups (ie: 1 exercise for chest, 1 for glutes, 1 for upper back, etc.)
3-4 days of aerobic training working on a continuing increase of intensity and possibly working towards HIIT.
The main thing to remember is every workout you should reach a point you didn't in the previous, no two workouts should be the same as far as your results.
You do that, pick up the pace of your workouts, really get some intensity in there and you are golden and shedding that fat!